Check the newest release v13
MotifARI1A.H12CORE.0.P.C
Gene (human)ARID1A
(GeneCards)
Gene synonyms (human)BAF250, BAF250A, C1orf4, OSA1, SMARCF1
Gene (mouse)Arid1a
Gene synonyms (mouse)Baf250, Baf250a, Osa1, Smarcf1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length11
ConsensusWTTTATKRShh
GC content25.84%
Information content (bits; total / per base)11.332 / 1.03
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.786 0.809 0.667 0.705 0.746 0.771 2.188 2.313 70.367 87.523
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classARID domain factors {3.7} (TFClass)
TF familyARID-related {3.7.1} (TFClass)
TF subfamilyARID1 {3.7.1.1} (TFClass)
TFClass IDTFClass: 3.7.1.1.1
HGNCHGNC:11110
MGIMGI:1935147
EntrezGene (human)GeneID:8289
(SSTAR profile)
EntrezGene (mouse)GeneID:93760
(SSTAR profile)
UniProt ID (human)ARI1A_HUMAN
UniProt ID (mouse)ARI1A_MOUSE
UniProt AC (human)O14497
(TFClass)
UniProt AC (mouse)A2BH40
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0179.039.077.0806.0
022.08.04.0987.0
036.023.06.0966.0
0445.069.018.0869.0
05965.017.014.05.0
0618.014.06.0963.0
07171.01.0286.0543.0
08252.020.0666.063.0
0925.0339.0493.0144.0
10266.0331.0109.0295.0
11205.0182.0123.0491.0
PFM
ACGT
010.0790.0390.0770.805
020.0020.0080.0040.986
030.0060.0230.0060.965
040.0450.0690.0180.868
050.9640.0170.0140.005
060.0180.0140.0060.962
070.1710.0010.2860.542
080.2520.020.6650.063
090.0250.3390.4930.144
100.2660.3310.1090.295
110.2050.1820.1230.491
PWM
ACGT
01-1.138-1.822-1.1631.165
02-4.214-3.254-3.7841.367
03-3.485-2.321-3.4851.346
04-1.685-1.271-2.5471.24
051.345-2.599-2.774-3.623
06-2.547-2.774-3.4851.343
07-0.378-4.5260.1330.771
080.007-2.4510.975-1.359
09-2.2440.3020.675-0.548
100.0610.278-0.8220.163
11-0.198-0.316-0.7030.671
Standard thresholds
P-value Threshold
0.001 4.325225
0.0005 5.31838
0.0001 7.31291