MotifARGFX.H12RSNP.0.SM.D
Gene (human)ARGFX
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length15
ConsensusnvhTAATTARvYYMn
GC content25.21%
Information content (bits; total / per base)14.766 / 0.984
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words849

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.781 0.785 0.635 0.656 0.562 0.589
best 0.914 0.906 0.707 0.731 0.593 0.631
Methyl HT-SELEX, 1 experiments median 0.648 0.664 0.563 0.582 0.531 0.546
best 0.648 0.664 0.563 0.582 0.531 0.546
Non-Methyl HT-SELEX, 1 experiments median 0.914 0.906 0.707 0.731 0.593 0.631
best 0.914 0.906 0.707 0.731 0.593 0.631
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyARGFX {3.1.3.2} (TFClass)
TFClass IDTFClass: 3.1.3.2.1
HGNCHGNC:30146
MGI
EntrezGene (human)GeneID:503582
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ARGFX_HUMAN
UniProt ID (mouse)
UniProt AC (human)A6NJG6
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01193.25281.25174.25200.25
02300.75194.75260.7592.75
0372.0408.067.0302.0
042.01.00.0846.0
05848.01.00.00.0
06849.00.00.00.0
070.01.00.0848.0
080.00.00.0849.0
09782.06.058.03.0
10365.088.0387.09.0
11480.0203.099.067.0
1243.0212.068.0526.0
1385.0107.077.0580.0
14572.0114.053.0110.0
15329.0146.0204.0170.0
PFM
ACGT
010.2280.3310.2050.236
020.3540.2290.3070.109
030.0850.4810.0790.356
040.0020.0010.00.996
050.9990.0010.00.0
061.00.00.00.0
070.00.0010.00.999
080.00.00.01.0
090.9210.0070.0680.004
100.430.1040.4560.011
110.5650.2390.1170.079
120.0510.250.080.62
130.10.1260.0910.683
140.6740.1340.0620.13
150.3880.1720.240.2
PWM
ACGT
01-0.0930.28-0.196-0.058
020.346-0.0850.204-0.818
03-1.0660.65-1.1360.35
04-4.061-4.378-4.8431.377
051.379-4.378-4.843-4.843
061.38-4.843-4.843-4.843
07-4.843-4.378-4.8431.379
08-4.843-4.843-4.8431.38
091.298-3.326-1.277-3.821
100.539-0.8690.597-2.997
110.812-0.044-0.754-1.136
12-1.566-0.001-1.1220.903
13-0.903-0.677-1.01.0
140.986-0.615-1.364-0.65
150.435-0.371-0.039-0.22
Standard thresholds
P-value Threshold
0.001 2.29786
0.0005 3.63731
0.0001 6.68701