ARGFX.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ARGFX.H12INVIVO.0.SM.D
Gene (human)	ARGFX (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	nvhTAATTARvYYMn
GC content	25.21%
Information content (bits; total / per base)	14.766 / 0.984
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	849

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.781	0.785	0.635	0.656	0.562	0.589
Overall, 2 experiments	best	0.914	0.906	0.707	0.731	0.593	0.631
Methyl HT-SELEX, 1 experiments	median	0.648	0.664	0.563	0.582	0.531	0.546
Methyl HT-SELEX, 1 experiments	best	0.648	0.664	0.563	0.582	0.531	0.546
Non-Methyl HT-SELEX, 1 experiments	median	0.914	0.906	0.707	0.731	0.593	0.631
Non-Methyl HT-SELEX, 1 experiments	best	0.914	0.906	0.707	0.731	0.593	0.631

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	Paired-related HD {3.1.3} (TFClass)
TF subfamily	ARGFX {3.1.3.2} (TFClass)
TFClass ID	TFClass: 3.1.3.2.1
HGNC	HGNC:30146
MGI
EntrezGene (human)	GeneID:503582 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ARGFX_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A6NJG6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ARGFX.H12INVIVO.0.SM.D.pcm
PWM	ARGFX.H12INVIVO.0.SM.D.pwm
PFM	ARGFX.H12INVIVO.0.SM.D.pfm
Alignment	ARGFX.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ARGFX.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ARGFX.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ARGFX.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ARGFX.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ARGFX.H12INVIVO.0.SM.D_homer_format_0.001.txt ARGFX.H12INVIVO.0.SM.D_homer_format_0.0005.txt ARGFX.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	193.25	281.25	174.25	200.25
02	300.75	194.75	260.75	92.75
03	72.0	408.0	67.0	302.0
04	2.0	1.0	0.0	846.0
05	848.0	1.0	0.0	0.0
06	849.0	0.0	0.0	0.0
07	0.0	1.0	0.0	848.0
08	0.0	0.0	0.0	849.0
09	782.0	6.0	58.0	3.0
10	365.0	88.0	387.0	9.0
11	480.0	203.0	99.0	67.0
12	43.0	212.0	68.0	526.0
13	85.0	107.0	77.0	580.0
14	572.0	114.0	53.0	110.0
15	329.0	146.0	204.0	170.0

PFM

	A	C	G	T
01	0.228	0.331	0.205	0.236
02	0.354	0.229	0.307	0.109
03	0.085	0.481	0.079	0.356
04	0.002	0.001	0.0	0.996
05	0.999	0.001	0.0	0.0
06	1.0	0.0	0.0	0.0
07	0.0	0.001	0.0	0.999
08	0.0	0.0	0.0	1.0
09	0.921	0.007	0.068	0.004
10	0.43	0.104	0.456	0.011
11	0.565	0.239	0.117	0.079
12	0.051	0.25	0.08	0.62
13	0.1	0.126	0.091	0.683
14	0.674	0.134	0.062	0.13
15	0.388	0.172	0.24	0.2

PWM

	A	C	G	T
01	-0.093	0.28	-0.196	-0.058
02	0.346	-0.085	0.204	-0.818
03	-1.066	0.65	-1.136	0.35
04	-4.061	-4.378	-4.843	1.377
05	1.379	-4.378	-4.843	-4.843
06	1.38	-4.843	-4.843	-4.843
07	-4.843	-4.378	-4.843	1.379
08	-4.843	-4.843	-4.843	1.38
09	1.298	-3.326	-1.277	-3.821
10	0.539	-0.869	0.597	-2.997
11	0.812	-0.044	-0.754	-1.136
12	-1.566	-0.001	-1.122	0.903
13	-0.903	-0.677	-1.0	1.0
14	0.986	-0.615	-1.364	-0.65
15	0.435	-0.371	-0.039	-0.22

Standard thresholds

P-value	Threshold
0.001	2.29786
0.0005	3.63731
0.0001	6.68701