Motif | ARGFX.H12INVIVO.0.SM.D |
Gene (human) | ARGFX (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | ARGFX.H12INVIVO.0.SM.D |
Gene (human) | ARGFX (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 15 |
Consensus | nvhTAATTARvYYMn |
GC content | 25.21% |
Information content (bits; total / per base) | 14.766 / 0.984 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 849 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.781 | 0.785 | 0.635 | 0.656 | 0.562 | 0.589 |
best | 0.914 | 0.906 | 0.707 | 0.731 | 0.593 | 0.631 | |
Methyl HT-SELEX, 1 experiments | median | 0.648 | 0.664 | 0.563 | 0.582 | 0.531 | 0.546 |
best | 0.648 | 0.664 | 0.563 | 0.582 | 0.531 | 0.546 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.914 | 0.906 | 0.707 | 0.731 | 0.593 | 0.631 |
best | 0.914 | 0.906 | 0.707 | 0.731 | 0.593 | 0.631 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | Paired-related HD {3.1.3} (TFClass) |
TF subfamily | ARGFX {3.1.3.2} (TFClass) |
TFClass ID | TFClass: 3.1.3.2.1 |
HGNC | HGNC:30146 |
MGI | |
EntrezGene (human) | GeneID:503582 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | ARGFX_HUMAN |
UniProt ID (mouse) | |
UniProt AC (human) | A6NJG6 (TFClass) |
UniProt AC (mouse) | |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | ARGFX.H12INVIVO.0.SM.D.pcm |
PWM | ARGFX.H12INVIVO.0.SM.D.pwm |
PFM | ARGFX.H12INVIVO.0.SM.D.pfm |
Alignment | ARGFX.H12INVIVO.0.SM.D.words.tsv |
Threshold to P-value map | ARGFX.H12INVIVO.0.SM.D.thr |
Motif in other formats | |
JASPAR format | ARGFX.H12INVIVO.0.SM.D_jaspar_format.txt |
MEME format | ARGFX.H12INVIVO.0.SM.D_meme_format.meme |
Transfac format | ARGFX.H12INVIVO.0.SM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 193.25 | 281.25 | 174.25 | 200.25 |
02 | 300.75 | 194.75 | 260.75 | 92.75 |
03 | 72.0 | 408.0 | 67.0 | 302.0 |
04 | 2.0 | 1.0 | 0.0 | 846.0 |
05 | 848.0 | 1.0 | 0.0 | 0.0 |
06 | 849.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 1.0 | 0.0 | 848.0 |
08 | 0.0 | 0.0 | 0.0 | 849.0 |
09 | 782.0 | 6.0 | 58.0 | 3.0 |
10 | 365.0 | 88.0 | 387.0 | 9.0 |
11 | 480.0 | 203.0 | 99.0 | 67.0 |
12 | 43.0 | 212.0 | 68.0 | 526.0 |
13 | 85.0 | 107.0 | 77.0 | 580.0 |
14 | 572.0 | 114.0 | 53.0 | 110.0 |
15 | 329.0 | 146.0 | 204.0 | 170.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.228 | 0.331 | 0.205 | 0.236 |
02 | 0.354 | 0.229 | 0.307 | 0.109 |
03 | 0.085 | 0.481 | 0.079 | 0.356 |
04 | 0.002 | 0.001 | 0.0 | 0.996 |
05 | 0.999 | 0.001 | 0.0 | 0.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.001 | 0.0 | 0.999 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.921 | 0.007 | 0.068 | 0.004 |
10 | 0.43 | 0.104 | 0.456 | 0.011 |
11 | 0.565 | 0.239 | 0.117 | 0.079 |
12 | 0.051 | 0.25 | 0.08 | 0.62 |
13 | 0.1 | 0.126 | 0.091 | 0.683 |
14 | 0.674 | 0.134 | 0.062 | 0.13 |
15 | 0.388 | 0.172 | 0.24 | 0.2 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.093 | 0.28 | -0.196 | -0.058 |
02 | 0.346 | -0.085 | 0.204 | -0.818 |
03 | -1.066 | 0.65 | -1.136 | 0.35 |
04 | -4.061 | -4.378 | -4.843 | 1.377 |
05 | 1.379 | -4.378 | -4.843 | -4.843 |
06 | 1.38 | -4.843 | -4.843 | -4.843 |
07 | -4.843 | -4.378 | -4.843 | 1.379 |
08 | -4.843 | -4.843 | -4.843 | 1.38 |
09 | 1.298 | -3.326 | -1.277 | -3.821 |
10 | 0.539 | -0.869 | 0.597 | -2.997 |
11 | 0.812 | -0.044 | -0.754 | -1.136 |
12 | -1.566 | -0.001 | -1.122 | 0.903 |
13 | -0.903 | -0.677 | -1.0 | 1.0 |
14 | 0.986 | -0.615 | -1.364 | -0.65 |
15 | 0.435 | -0.371 | -0.039 | -0.22 |
P-value | Threshold |
---|---|
0.001 | 2.29786 |
0.0005 | 3.63731 |
0.0001 | 6.68701 |