Motif | ANDR.H12RSNP.1.S.C |
Gene (human) | AR (GeneCards) |
Gene synonyms (human) | DHTR, NR3C4 |
Gene (mouse) | Ar |
Gene synonyms (mouse) | Nr3c4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | C |
Motif | ANDR.H12RSNP.1.S.C |
Gene (human) | AR (GeneCards) |
Gene synonyms (human) | DHTR, NR3C4 |
Gene (mouse) | Ar |
Gene synonyms (mouse) | Nr3c4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | C |
Motif length | 8 |
Consensus | dTGTTCbn |
GC content | 46.34% |
Information content (bits; total / per base) | 8.446 / 1.056 |
Data sources | HT-SELEX |
Aligned words | 6603 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 237 (413) | 0.761 | 0.88 | 0.604 | 0.781 | 0.693 | 0.795 | 1.648 | 2.195 | 83.284 | 201.658 |
Mouse | 20 (35) | 0.756 | 0.838 | 0.631 | 0.731 | 0.728 | 0.788 | 1.864 | 2.088 | 133.201 | 186.143 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 3 experiments | median | 0.681 | 0.652 | 0.596 | 0.589 | 0.553 | 0.555 |
best | 0.949 | 0.916 | 0.919 | 0.88 | 0.828 | 0.805 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 1.117 | 1.223 | 0.021 | 0.006 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
TF family | Steroid hormone receptors {2.1.1} (TFClass) |
TF subfamily | GR-like (NR3C) {2.1.1.1} (TFClass) |
TFClass ID | TFClass: 2.1.1.1.4 |
HGNC | HGNC:644 |
MGI | MGI:88064 |
EntrezGene (human) | GeneID:367 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11835 (SSTAR profile) |
UniProt ID (human) | ANDR_HUMAN |
UniProt ID (mouse) | ANDR_MOUSE |
UniProt AC (human) | P10275 (TFClass) |
UniProt AC (mouse) | P19091 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 237 human, 20 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 0 |
PCM | ANDR.H12RSNP.1.S.C.pcm |
PWM | ANDR.H12RSNP.1.S.C.pwm |
PFM | ANDR.H12RSNP.1.S.C.pfm |
Alignment | ANDR.H12RSNP.1.S.C.words.tsv |
Threshold to P-value map | ANDR.H12RSNP.1.S.C.thr |
Motif in other formats | |
JASPAR format | ANDR.H12RSNP.1.S.C_jaspar_format.txt |
MEME format | ANDR.H12RSNP.1.S.C_meme_format.meme |
Transfac format | ANDR.H12RSNP.1.S.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2161.75 | 1006.75 | 2329.75 | 1104.75 |
02 | 105.75 | 787.75 | 93.75 | 5615.75 |
03 | 240.0 | 12.0 | 6320.0 | 31.0 |
04 | 0.0 | 0.0 | 0.0 | 6603.0 |
05 | 2083.0 | 0.0 | 0.0 | 4520.0 |
06 | 0.0 | 6603.0 | 0.0 | 0.0 |
07 | 844.0 | 3187.0 | 1049.0 | 1523.0 |
08 | 1195.25 | 2049.25 | 1042.25 | 2316.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.327 | 0.152 | 0.353 | 0.167 |
02 | 0.016 | 0.119 | 0.014 | 0.85 |
03 | 0.036 | 0.002 | 0.957 | 0.005 |
04 | 0.0 | 0.0 | 0.0 | 1.0 |
05 | 0.315 | 0.0 | 0.0 | 0.685 |
06 | 0.0 | 1.0 | 0.0 | 0.0 |
07 | 0.128 | 0.483 | 0.159 | 0.231 |
08 | 0.181 | 0.31 | 0.158 | 0.351 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.269 | -0.494 | 0.344 | -0.401 |
02 | -2.729 | -0.738 | -2.847 | 1.223 |
03 | -1.921 | -4.757 | 1.342 | -3.908 |
04 | -6.622 | -6.622 | -6.622 | 1.385 |
05 | 0.232 | -6.622 | -6.622 | 1.006 |
06 | -6.622 | 1.385 | -6.622 | -6.622 |
07 | -0.67 | 0.657 | -0.453 | -0.08 |
08 | -0.322 | 0.216 | -0.459 | 0.338 |
P-value | Threshold |
---|---|
0.001 | 5.617575 |
0.0005 | 6.17939 |
0.0001 | 6.94118 |