Motif | ANDR.H12RSNP.0.P.B |
Gene (human) | AR (GeneCards) |
Gene synonyms (human) | DHTR, NR3C4 |
Gene (mouse) | Ar |
Gene synonyms (mouse) | Nr3c4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | ANDR.H12RSNP.0.P.B |
Gene (human) | AR (GeneCards) |
Gene synonyms (human) | DHTR, NR3C4 |
Gene (mouse) | Ar |
Gene synonyms (mouse) | Nr3c4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 19 |
Consensus | RGdACAbKbTGTWCYhbnh |
GC content | 46.75% |
Information content (bits; total / per base) | 15.695 / 0.826 |
Data sources | ChIP-Seq |
Aligned words | 237 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 237 (413) | 0.852 | 0.983 | 0.782 | 0.975 | 0.818 | 0.978 | 3.153 | 6.774 | 194.824 | 538.678 |
Mouse | 20 (35) | 0.916 | 0.98 | 0.875 | 0.961 | 0.919 | 0.982 | 4.496 | 6.197 | 393.602 | 599.854 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 3 experiments | median | 0.68 | 0.702 | 0.577 | 0.601 | 0.535 | 0.556 |
best | 0.999 | 0.998 | 0.993 | 0.991 | 0.91 | 0.912 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 1.308 | 5.328 | 0.033 | 0.011 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
TF family | Steroid hormone receptors {2.1.1} (TFClass) |
TF subfamily | GR-like (NR3C) {2.1.1.1} (TFClass) |
TFClass ID | TFClass: 2.1.1.1.4 |
HGNC | HGNC:644 |
MGI | MGI:88064 |
EntrezGene (human) | GeneID:367 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11835 (SSTAR profile) |
UniProt ID (human) | ANDR_HUMAN |
UniProt ID (mouse) | ANDR_MOUSE |
UniProt AC (human) | P10275 (TFClass) |
UniProt AC (mouse) | P19091 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 237 human, 20 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 0 |
PCM | ANDR.H12RSNP.0.P.B.pcm |
PWM | ANDR.H12RSNP.0.P.B.pwm |
PFM | ANDR.H12RSNP.0.P.B.pfm |
Alignment | ANDR.H12RSNP.0.P.B.words.tsv |
Threshold to P-value map | ANDR.H12RSNP.0.P.B.thr |
Motif in other formats | |
JASPAR format | ANDR.H12RSNP.0.P.B_jaspar_format.txt |
MEME format | ANDR.H12RSNP.0.P.B_meme_format.meme |
Transfac format | ANDR.H12RSNP.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 127.0 | 0.0 | 93.0 | 17.0 |
02 | 2.0 | 5.0 | 210.0 | 20.0 |
03 | 95.0 | 29.0 | 35.0 | 78.0 |
04 | 220.0 | 12.0 | 1.0 | 4.0 |
05 | 0.0 | 234.0 | 3.0 | 0.0 |
06 | 191.0 | 1.0 | 20.0 | 25.0 |
07 | 25.0 | 65.0 | 46.0 | 101.0 |
08 | 14.0 | 33.0 | 54.0 | 136.0 |
09 | 14.0 | 88.0 | 90.0 | 45.0 |
10 | 15.0 | 13.0 | 5.0 | 204.0 |
11 | 3.0 | 1.0 | 232.0 | 1.0 |
12 | 3.0 | 7.0 | 2.0 | 225.0 |
13 | 32.0 | 24.0 | 26.0 | 155.0 |
14 | 4.0 | 225.0 | 0.0 | 8.0 |
15 | 10.0 | 105.0 | 2.0 | 120.0 |
16 | 34.0 | 73.0 | 30.0 | 100.0 |
17 | 34.0 | 39.0 | 58.0 | 106.0 |
18 | 33.0 | 53.0 | 68.0 | 83.0 |
19 | 43.0 | 89.0 | 34.0 | 71.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.536 | 0.0 | 0.392 | 0.072 |
02 | 0.008 | 0.021 | 0.886 | 0.084 |
03 | 0.401 | 0.122 | 0.148 | 0.329 |
04 | 0.928 | 0.051 | 0.004 | 0.017 |
05 | 0.0 | 0.987 | 0.013 | 0.0 |
06 | 0.806 | 0.004 | 0.084 | 0.105 |
07 | 0.105 | 0.274 | 0.194 | 0.426 |
08 | 0.059 | 0.139 | 0.228 | 0.574 |
09 | 0.059 | 0.371 | 0.38 | 0.19 |
10 | 0.063 | 0.055 | 0.021 | 0.861 |
11 | 0.013 | 0.004 | 0.979 | 0.004 |
12 | 0.013 | 0.03 | 0.008 | 0.949 |
13 | 0.135 | 0.101 | 0.11 | 0.654 |
14 | 0.017 | 0.949 | 0.0 | 0.034 |
15 | 0.042 | 0.443 | 0.008 | 0.506 |
16 | 0.143 | 0.308 | 0.127 | 0.422 |
17 | 0.143 | 0.165 | 0.245 | 0.447 |
18 | 0.139 | 0.224 | 0.287 | 0.35 |
19 | 0.181 | 0.376 | 0.143 | 0.3 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.75 | -3.792 | 0.443 | -1.194 |
02 | -2.891 | -2.253 | 1.249 | -1.043 |
03 | 0.464 | -0.691 | -0.511 | 0.27 |
04 | 1.295 | -1.512 | -3.243 | -2.424 |
05 | -3.792 | 1.357 | -2.63 | -3.792 |
06 | 1.155 | -3.243 | -1.043 | -0.832 |
07 | -0.832 | 0.091 | -0.247 | 0.524 |
08 | -1.372 | -0.567 | -0.091 | 0.818 |
09 | -1.372 | 0.388 | 0.41 | -0.268 |
10 | -1.309 | -1.44 | -2.253 | 1.22 |
11 | -2.63 | -3.243 | 1.348 | -3.243 |
12 | -2.63 | -1.98 | -2.891 | 1.318 |
13 | -0.597 | -0.871 | -0.795 | 0.948 |
14 | -2.424 | 1.318 | -3.792 | -1.867 |
15 | -1.674 | 0.562 | -2.891 | 0.694 |
16 | -0.539 | 0.204 | -0.659 | 0.514 |
17 | -0.539 | -0.407 | -0.021 | 0.572 |
18 | -0.567 | -0.109 | 0.135 | 0.331 |
19 | -0.312 | 0.399 | -0.539 | 0.177 |
P-value | Threshold |
---|---|
0.001 | 3.05791 |
0.0005 | 4.19041 |
0.0001 | 6.56721 |