MotifANDR.H12RSNP.0.P.B
Gene (human)AR
(GeneCards)
Gene synonyms (human)DHTR, NR3C4
Gene (mouse)Ar
Gene synonyms (mouse)Nr3c4
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length19
ConsensusRGdACAbKbTGTWCYhbnh
GC content46.75%
Information content (bits; total / per base)15.695 / 0.826
Data sourcesChIP-Seq
Aligned words237

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 237 (413) 0.852 0.983 0.782 0.975 0.818 0.978 3.153 6.774 194.824 538.678
Mouse 20 (35) 0.916 0.98 0.875 0.961 0.919 0.982 4.496 6.197 393.602 599.854

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 3 experiments median 0.68 0.702 0.577 0.601 0.535 0.556
best 0.999 0.998 0.993 0.991 0.91 0.912

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 1.308 5.328 0.033 0.011
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familySteroid hormone receptors {2.1.1} (TFClass)
TF subfamilyGR-like (NR3C) {2.1.1.1} (TFClass)
TFClass IDTFClass: 2.1.1.1.4
HGNCHGNC:644
MGIMGI:88064
EntrezGene (human)GeneID:367
(SSTAR profile)
EntrezGene (mouse)GeneID:11835
(SSTAR profile)
UniProt ID (human)ANDR_HUMAN
UniProt ID (mouse)ANDR_MOUSE
UniProt AC (human)P10275
(TFClass)
UniProt AC (mouse)P19091
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 237 human, 20 mouse
HT-SELEX 3
Methyl-HT-SELEX 0
PCM
ACGT
01127.00.093.017.0
022.05.0210.020.0
0395.029.035.078.0
04220.012.01.04.0
050.0234.03.00.0
06191.01.020.025.0
0725.065.046.0101.0
0814.033.054.0136.0
0914.088.090.045.0
1015.013.05.0204.0
113.01.0232.01.0
123.07.02.0225.0
1332.024.026.0155.0
144.0225.00.08.0
1510.0105.02.0120.0
1634.073.030.0100.0
1734.039.058.0106.0
1833.053.068.083.0
1943.089.034.071.0
PFM
ACGT
010.5360.00.3920.072
020.0080.0210.8860.084
030.4010.1220.1480.329
040.9280.0510.0040.017
050.00.9870.0130.0
060.8060.0040.0840.105
070.1050.2740.1940.426
080.0590.1390.2280.574
090.0590.3710.380.19
100.0630.0550.0210.861
110.0130.0040.9790.004
120.0130.030.0080.949
130.1350.1010.110.654
140.0170.9490.00.034
150.0420.4430.0080.506
160.1430.3080.1270.422
170.1430.1650.2450.447
180.1390.2240.2870.35
190.1810.3760.1430.3
PWM
ACGT
010.75-3.7920.443-1.194
02-2.891-2.2531.249-1.043
030.464-0.691-0.5110.27
041.295-1.512-3.243-2.424
05-3.7921.357-2.63-3.792
061.155-3.243-1.043-0.832
07-0.8320.091-0.2470.524
08-1.372-0.567-0.0910.818
09-1.3720.3880.41-0.268
10-1.309-1.44-2.2531.22
11-2.63-3.2431.348-3.243
12-2.63-1.98-2.8911.318
13-0.597-0.871-0.7950.948
14-2.4241.318-3.792-1.867
15-1.6740.562-2.8910.694
16-0.5390.204-0.6590.514
17-0.539-0.407-0.0210.572
18-0.567-0.1090.1350.331
19-0.3120.399-0.5390.177
Standard thresholds
P-value Threshold
0.001 3.05791
0.0005 4.19041
0.0001 6.56721