Motif | ALX4.H12RSNP.1.SM.D |
Gene (human) | ALX4 (GeneCards) |
Gene synonyms (human) | KIAA1788 |
Gene (mouse) | Alx4 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif | ALX4.H12RSNP.1.SM.D |
Gene (human) | ALX4 (GeneCards) |
Gene synonyms (human) | KIAA1788 |
Gene (mouse) | Alx4 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | D |
Motif length | 13 |
Consensus | nvvYTAATTRvnn |
GC content | 33.41% |
Information content (bits; total / per base) | 11.332 / 0.872 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 2350 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 6 experiments | median | 0.978 | 0.963 | 0.962 | 0.942 | 0.906 | 0.881 |
best | 0.988 | 0.979 | 0.981 | 0.969 | 0.973 | 0.957 | |
Methyl HT-SELEX, 1 experiments | median | 0.937 | 0.896 | 0.917 | 0.872 | 0.885 | 0.838 |
best | 0.937 | 0.896 | 0.917 | 0.872 | 0.885 | 0.838 | |
Non-Methyl HT-SELEX, 5 experiments | median | 0.98 | 0.967 | 0.965 | 0.946 | 0.907 | 0.888 |
best | 0.988 | 0.979 | 0.981 | 0.969 | 0.973 | 0.957 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | Paired-related HD {3.1.3} (TFClass) |
TF subfamily | ALX {3.1.3.1} (TFClass) |
TFClass ID | TFClass: 3.1.3.1.3 |
HGNC | HGNC:450 |
MGI | MGI:108359 |
EntrezGene (human) | GeneID:60529 (SSTAR profile) |
EntrezGene (mouse) | GeneID:11695 (SSTAR profile) |
UniProt ID (human) | ALX4_HUMAN |
UniProt ID (mouse) | ALX4_MOUSE |
UniProt AC (human) | Q9H161 (TFClass) |
UniProt AC (mouse) | O35137 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 5 |
Methyl-HT-SELEX | 1 |
PCM | ALX4.H12RSNP.1.SM.D.pcm |
PWM | ALX4.H12RSNP.1.SM.D.pwm |
PFM | ALX4.H12RSNP.1.SM.D.pfm |
Alignment | ALX4.H12RSNP.1.SM.D.words.tsv |
Threshold to P-value map | ALX4.H12RSNP.1.SM.D.thr |
Motif in other formats | |
JASPAR format | ALX4.H12RSNP.1.SM.D_jaspar_format.txt |
MEME format | ALX4.H12RSNP.1.SM.D_meme_format.meme |
Transfac format | ALX4.H12RSNP.1.SM.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 784.0 | 392.0 | 552.0 | 622.0 |
02 | 755.75 | 884.75 | 470.75 | 238.75 |
03 | 537.0 | 682.0 | 994.0 | 137.0 |
04 | 11.0 | 1113.0 | 165.0 | 1061.0 |
05 | 0.0 | 2.0 | 0.0 | 2348.0 |
06 | 2350.0 | 0.0 | 0.0 | 0.0 |
07 | 2350.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 5.0 | 0.0 | 2345.0 |
09 | 6.0 | 219.0 | 131.0 | 1994.0 |
10 | 1519.0 | 71.0 | 731.0 | 29.0 |
11 | 453.0 | 772.0 | 825.0 | 300.0 |
12 | 385.0 | 611.0 | 701.0 | 653.0 |
13 | 531.25 | 463.25 | 422.25 | 933.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.334 | 0.167 | 0.235 | 0.265 |
02 | 0.322 | 0.376 | 0.2 | 0.102 |
03 | 0.229 | 0.29 | 0.423 | 0.058 |
04 | 0.005 | 0.474 | 0.07 | 0.451 |
05 | 0.0 | 0.001 | 0.0 | 0.999 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.002 | 0.0 | 0.998 |
09 | 0.003 | 0.093 | 0.056 | 0.849 |
10 | 0.646 | 0.03 | 0.311 | 0.012 |
11 | 0.193 | 0.329 | 0.351 | 0.128 |
12 | 0.164 | 0.26 | 0.298 | 0.278 |
13 | 0.226 | 0.197 | 0.18 | 0.397 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.288 | -0.403 | -0.062 | 0.057 |
02 | 0.251 | 0.408 | -0.221 | -0.896 |
03 | -0.09 | 0.149 | 0.525 | -1.445 |
04 | -3.819 | 0.637 | -1.262 | 0.59 |
05 | -5.716 | -5.008 | -5.716 | 1.383 |
06 | 1.384 | -5.716 | -5.716 | -5.716 |
07 | 1.384 | -5.716 | -5.716 | -5.716 |
08 | -5.716 | -4.442 | -5.716 | 1.382 |
09 | -4.307 | -0.981 | -1.489 | 1.22 |
10 | 0.948 | -2.09 | 0.218 | -2.947 |
11 | -0.259 | 0.272 | 0.339 | -0.669 |
12 | -0.421 | 0.039 | 0.176 | 0.105 |
13 | -0.1 | -0.237 | -0.329 | 0.462 |
P-value | Threshold |
---|---|
0.001 | 4.029815 |
0.0005 | 5.53711 |
0.0001 | 7.80446 |