MotifALX4.H12INVIVO.0.S.D
Gene (human)ALX4
(GeneCards)
Gene synonyms (human)KIAA1788
Gene (mouse)Alx4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length20
ConsensusvvbTAATTRRATTAvbnnnn
GC content32.13%
Information content (bits; total / per base)17.273 / 0.864
Data sourcesHT-SELEX
Aligned words6332

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.997 0.995 0.988 0.984 0.9 0.902
best 1.0 0.999 0.999 0.999 0.997 0.996
Methyl HT-SELEX, 1 experiments median 0.946 0.911 0.917 0.877 0.871 0.829
best 0.946 0.911 0.917 0.877 0.871 0.829
Non-Methyl HT-SELEX, 5 experiments median 0.997 0.996 0.992 0.988 0.91 0.914
best 1.0 0.999 0.999 0.999 0.997 0.996
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyALX {3.1.3.1} (TFClass)
TFClass IDTFClass: 3.1.3.1.3
HGNCHGNC:450
MGIMGI:108359
EntrezGene (human)GeneID:60529
(SSTAR profile)
EntrezGene (mouse)GeneID:11695
(SSTAR profile)
UniProt ID (human)ALX4_HUMAN
UniProt ID (mouse)ALX4_MOUSE
UniProt AC (human)Q9H161
(TFClass)
UniProt AC (mouse)O35137
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 1
PCM
ACGT
011397.251257.252688.25989.25
021259.51054.53185.5832.5
03380.02454.01817.01681.0
04100.0176.016.06040.0
056191.02.0137.02.0
066332.00.00.00.0
070.06.00.06326.0
080.0951.042.05339.0
093814.0418.01116.0984.0
102823.0230.03279.00.0
115551.096.0426.0259.0
124.0104.055.06169.0
13215.0314.040.05763.0
145980.044.0177.0131.0
152252.01155.02410.0515.0
16949.01646.01270.02467.0
17964.01471.01608.02289.0
181514.02254.01409.01155.0
191351.02362.01411.01208.0
201310.252205.251401.251415.25
PFM
ACGT
010.2210.1990.4250.156
020.1990.1670.5030.131
030.060.3880.2870.265
040.0160.0280.0030.954
050.9780.00.0220.0
061.00.00.00.0
070.00.0010.00.999
080.00.150.0070.843
090.6020.0660.1760.155
100.4460.0360.5180.0
110.8770.0150.0670.041
120.0010.0160.0090.974
130.0340.050.0060.91
140.9440.0070.0280.021
150.3560.1820.3810.081
160.150.260.2010.39
170.1520.2320.2540.361
180.2390.3560.2230.182
190.2130.3730.2230.191
200.2070.3480.2210.224
PWM
ACGT
01-0.125-0.230.529-0.469
02-0.228-0.4060.699-0.641
03-1.4230.4380.1380.06
04-2.742-2.186-4.4681.338
051.363-5.936-2.433-5.936
061.385-6.585-6.585-6.585
07-6.585-5.266-6.5851.384
08-6.585-0.509-3.581.215
090.879-1.328-0.349-0.475
100.578-1.9210.728-6.585
111.254-2.782-1.309-1.803
12-5.546-2.703-3.3221.359
13-1.988-1.612-3.6261.291
141.328-3.536-2.18-2.477
150.352-0.3150.42-1.12
16-0.5110.039-0.220.443
17-0.495-0.0730.0160.368
18-0.0450.353-0.116-0.315
19-0.1580.4-0.115-0.27
20-0.1890.331-0.122-0.112
Standard thresholds
P-value Threshold
0.001 0.57776
0.0005 2.15766
0.0001 5.40806