MotifALX4.H12INVITRO.1.SM.B
Gene (human)ALX4
(GeneCards)
Gene synonyms (human)KIAA1788
Gene (mouse)Alx4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length13
ConsensusnvvYTAATTRvnn
GC content33.41%
Information content (bits; total / per base)11.332 / 0.872
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words2350

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.978 0.963 0.962 0.942 0.906 0.881
best 0.988 0.979 0.981 0.969 0.973 0.957
Methyl HT-SELEX, 1 experiments median 0.937 0.896 0.917 0.872 0.885 0.838
best 0.937 0.896 0.917 0.872 0.885 0.838
Non-Methyl HT-SELEX, 5 experiments median 0.98 0.967 0.965 0.946 0.907 0.888
best 0.988 0.979 0.981 0.969 0.973 0.957
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyALX {3.1.3.1} (TFClass)
TFClass IDTFClass: 3.1.3.1.3
HGNCHGNC:450
MGIMGI:108359
EntrezGene (human)GeneID:60529
(SSTAR profile)
EntrezGene (mouse)GeneID:11695
(SSTAR profile)
UniProt ID (human)ALX4_HUMAN
UniProt ID (mouse)ALX4_MOUSE
UniProt AC (human)Q9H161
(TFClass)
UniProt AC (mouse)O35137
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 1
PCM
ACGT
01784.0392.0552.0622.0
02755.75884.75470.75238.75
03537.0682.0994.0137.0
0411.01113.0165.01061.0
050.02.00.02348.0
062350.00.00.00.0
072350.00.00.00.0
080.05.00.02345.0
096.0219.0131.01994.0
101519.071.0731.029.0
11453.0772.0825.0300.0
12385.0611.0701.0653.0
13531.25463.25422.25933.25
PFM
ACGT
010.3340.1670.2350.265
020.3220.3760.20.102
030.2290.290.4230.058
040.0050.4740.070.451
050.00.0010.00.999
061.00.00.00.0
071.00.00.00.0
080.00.0020.00.998
090.0030.0930.0560.849
100.6460.030.3110.012
110.1930.3290.3510.128
120.1640.260.2980.278
130.2260.1970.180.397
PWM
ACGT
010.288-0.403-0.0620.057
020.2510.408-0.221-0.896
03-0.090.1490.525-1.445
04-3.8190.637-1.2620.59
05-5.716-5.008-5.7161.383
061.384-5.716-5.716-5.716
071.384-5.716-5.716-5.716
08-5.716-4.442-5.7161.382
09-4.307-0.981-1.4891.22
100.948-2.090.218-2.947
11-0.2590.2720.339-0.669
12-0.4210.0390.1760.105
13-0.1-0.237-0.3290.462
Standard thresholds
P-value Threshold
0.001 4.029815
0.0005 5.53711
0.0001 7.80446