AHR.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	AHR.H12INVITRO.0.P.D
Gene (human)	AHR (GeneCards)
Gene synonyms (human)	BHLHE76
Gene (mouse)	Ahr
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	10
Consensus	vhbWGCGTGM
GC content	65.0%
Information content (bits; total / per base)	10.934 / 1.093
Data sources	ChIP-Seq
Aligned words	1003

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	11 (74)	0.91	0.94	0.832	0.882	0.861	0.91	3.2	3.674	207.012	479.745

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	5.54	4.986	0.222	0.102

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	PAS {1.2.5} (TFClass)
TF subfamily	PAS-AHR {1.2.5.1} (TFClass)
TFClass ID	TFClass: 1.2.5.1.1
HGNC	HGNC:348
MGI	MGI:105043
EntrezGene (human)	GeneID:196 (SSTAR profile)
EntrezGene (mouse)	GeneID:11622 (SSTAR profile)
UniProt ID (human)	AHR_HUMAN
UniProt ID (mouse)	AHR_MOUSE
UniProt AC (human)	P35869 (TFClass)
UniProt AC (mouse)	P30561 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 11 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	AHR.H12INVITRO.0.P.D.pcm
PWM	AHR.H12INVITRO.0.P.D.pwm
PFM	AHR.H12INVITRO.0.P.D.pfm
Alignment	AHR.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	AHR.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	AHR.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	AHR.H12INVITRO.0.P.D_meme_format.meme
Transfac format	AHR.H12INVITRO.0.P.D_transfac_format.txt
Homer format	AHR.H12INVITRO.0.P.D_homer_format_0.001.txt AHR.H12INVITRO.0.P.D_homer_format_0.0005.txt AHR.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	176.0	307.0	392.0	128.0
02	188.0	363.0	152.0	300.0
03	102.0	133.0	377.0	391.0
04	118.0	59.0	91.0	735.0
05	8.0	67.0	844.0	84.0
06	3.0	986.0	1.0	13.0
07	9.0	2.0	986.0	6.0
08	2.0	0.0	0.0	1001.0
09	1.0	0.0	1002.0	0.0
10	148.0	750.0	8.0	97.0

PFM

	A	C	G	T
01	0.175	0.306	0.391	0.128
02	0.187	0.362	0.152	0.299
03	0.102	0.133	0.376	0.39
04	0.118	0.059	0.091	0.733
05	0.008	0.067	0.841	0.084
06	0.003	0.983	0.001	0.013
07	0.009	0.002	0.983	0.006
08	0.002	0.0	0.0	0.998
09	0.001	0.0	0.999	0.0
10	0.148	0.748	0.008	0.097

PWM

	A	C	G	T
01	-0.351	0.201	0.444	-0.666
02	-0.286	0.368	-0.496	0.178
03	-0.89	-0.628	0.405	0.442
04	-0.746	-1.425	-1.002	1.071
05	-3.256	-1.301	1.209	-1.08
06	-3.978	1.364	-4.528	-2.842
07	-3.158	-4.216	1.364	-3.487
08	-4.216	-4.985	-4.985	1.379
09	-4.528	-4.985	1.38	-4.985
10	-0.523	1.091	-3.256	-0.939

Standard thresholds

P-value	Threshold
0.001	4.50458
0.0005	5.580515
0.0001	7.569355